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Introduction:

  • Introduction

Getting started

  • Installation
  • Tutorial 1: Data handling
  • Tutorial 2: Pixel map integration
  • Tutorial 3: Scanpy and AnnData integration
  • Tutorial 4: Exploratory analysis
  • Tutorial 5: Statistical modeling

User guide:

  • The SpatialData object:
  • The PixelMap object
  • The SpatialStatistics object
  • Next Neighbor analysis and spatial contexts:
  • Integrating scanpy/Anndata

Modules:

  • plankton
plankton.py
  • Search

© Copyright 2022, Sebastian Tiesmeyer. Revision 3c840eac.

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