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Introduction:
Introduction
Getting started
Installation
Tutorial 1: Data handling
Tutorial 2: Pixel map integration
Tutorial 3: Scanpy and AnnData integration
Tutorial 4: Exploratory analysis
Tutorial 5: Statistical modeling
User guide:
The SpatialData object:
The PixelMap object
The SpatialStatistics object
Next Neighbor analysis and spatial contexts:
Integrating scanpy/Anndata
Modules:
plankton
plankton.py
The SpatialStatistics object
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The SpatialStatistics object