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Introduction:

Introduction

Getting started

Installation
Tutorial 1: Data handling
Tutorial 2: Pixel map integration
Tutorial 3: Scanpy and AnnData integration
Tutorial 4: Exploratory analysis
Tutorial 5: Statistical modeling

User guide:

The SpatialData object:
The PixelMap object
The SpatialStatistics object
Next Neighbor analysis and spatial contexts:
Integrating scanpy/Anndata

Modules:

plankton

plankton.py

Installation
Edit on GitHub

Installation

Plankton.py is available as a pip package. It is recommended to create an

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